All functions

artemis-package artemis

The 'artemis' package.

as.data.frame(<eDNA_simulation>)

Methods for eDNA simulations

compile_models()

Compile artemis models

compiled_models_ok()

Check Compiled Models

conf_to_probs()

Confidence to probability

cq_to_lnconc()

Convert CQ value to [eDNA]

eDNA_data

eDNA_data

eDNA_lm() eDNA_lmer() eDNA_zinf_lm() eDNA_zinf_lmer()

Fit eDNA Model

eDNA_model-class eDNA_model_lm-class eDNA_model_lmer-class

eDNA model fit results

eDNA_simulation-class eDNA_simulation_lmer-class eDNA_simulation_lm-class

eDNA simulation results

est_p_detect()

Estimate the probability of detection

est_power_lm() est_power_lmer()

Estimate power

est_power_range_lm() est_power_range_lmer()

Estimate power for a range of replicates

lnconc_to_cq()

Convert [eDNA] to Cq

loo(<eDNA_model>)

Approximate leave-one-out cross-validation

normal() exponential()

Prior distributions

plot(<eDNA_model>)

Plot eDNA model results

plot(<eDNA_p_detect>)

Plot p(detect)

plot(<eDNA_simulation>)

Plot method for eDNA simulations

predict(<eDNA_model>) predict(<eDNA_model_lmer>)

Predict eDNA model

print(<eDNA_model>) show(<eDNA_model>)

Print eDNA model results

print(<eDNA_p_detect>)

Print eDNA p(detect)

print(<eDNA_simulation>)

Print eDNA simulation

ranef(<eDNA_model_lmer>)

Summarize random effect

sim_eDNA_lm() sim_eDNA_lmer()

Simulate eDNA data

summary(<eDNA_model>)

Summary of an eDNA model

summary(<eDNA_p_detect>)

Summary method for eDNA p(detect)

summary(<eDNA_simulation>)

Summary of eDNA simulations

waic(<eDNA_model>)

Approximate leave-one-out cross-validation